NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193598_1007073

Scaffold Ga0193598_1007073


Overview

Basic Information
Taxon OID3300018910 Open in IMG/M
Scaffold IDGa0193598_1007073 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3763
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011201Metagenome / Metatranscriptome293Y
F062389Metagenome / Metatranscriptome130N
F083444Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0193598_10070732F011201N/AMKKSKAKIKNGHGGARPGAGRHRHWKHQPVKMVRLPVAFVEKILEVAEYMDQHDGQLPCFEAPVTTSVTTLGYLERTLSPEELKEFLAREEAWKLAQKVMVGDEEVLVSDETFAGL
Ga0193598_10070733F083444GAGGMLNNISEVFSLEEVALENSDLLPKYGKKVVYFVTAMQGESKIFLYIGITVDLRMKFKNHPRKIEFEFLKRIGYQINICWIVFPDKTSQKKLQAIQTSYVQIFEPKLNDDQNTFARVQVEEKKKQFENWEQRRYEYLKKQIENWEQSGDDKDIIIKKIWEVCKQPFDDKQHLILPPYKPEKIAV
Ga0193598_10070735F062389N/ALDIHLAQYSISNKNDTARREFTEKSALLLESYQEDVPKSLVKAESCLGEAIDLINLIVSASEAGVNNE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.