NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193591_1004009

Scaffold Ga0193591_1004009


Overview

Basic Information
Taxon OID3300018915 Open in IMG/M
Scaffold IDGa0193591_1004009 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 0 min after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5648
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F011201Metagenome / Metatranscriptome293Y
F096282Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0193591_10040093F096282N/AMKFEHRGYTIELFLIGIHHPHHPKKIWEEARAIWKVVINGKENSGTRTGEREKVLADQKTFIDWLIDDPDMKNIF
Ga0193591_10040096F001042GGAGMTFTGDCPEGRSQDLTCAEADGKIVIDKMLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAQYSISNKNDIAHREFSEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNE
Ga0193591_10040099F011201N/AMKKSKAKSKMGHGGARPGAGRIPLWKHRPLKMVQLPLAFVEEILKVAHYMDQNEGRLPFSEASEDLVIISGHPSKSLSGEEIKELAAREKARKLAERVMVGDEWVLVSDETFRH
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