NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193611_1002876

Scaffold Ga0193611_1002876


Overview

Basic Information
Taxon OID3300018917 Open in IMG/M
Scaffold IDGa0193611_1002876 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 0 min after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7426
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011201Metagenome / Metatranscriptome293Y
F042710Metagenome157N
F083444Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0193611_10028762F011201N/AMKKSKAKSKSGRGGARTGAGRPRRWKYRPLKMVRLPVAFVEKILEVARYMDQNDGQLPFSEASEASMVISGHPSERLSEEEIKELLAKKKAQKLAQKVMAGDEWVLVSDETFAGF
Ga0193611_10028764F083444GAGGMLNNMSQVFSLEEIVWENTHLLPEDDKKVIYFVTTMQGESKTVLYIGFTVNLRKNFKNHHRRIEFEFLNKIGYQINISWIVLPDGTSHKEAQAVQMCYIRGFKPKLNDDQNSVAKVQDEELKKHMESRQQWRYEYLKKQIEKWEQSGEDKDTIVKKIWEVCKEPFSDKNLNSLAT
Ga0193611_10028765F042710GGAGMAENSAENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRQTWEAVLENHGEEKPAKPQFVVKPNQP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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