Basic Information | |
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Taxon OID | 3300018920 Open in IMG/M |
Scaffold ID | Ga0190273_10000010 Open in IMG/M |
Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 174522 |
Total Scaffold Genes | 189 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 135 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.4668 | Long. (o) | -109.6253 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016854 | Metagenome / Metatranscriptome | 244 | Y |
F031439 | Metagenome / Metatranscriptome | 182 | Y |
F049823 | Metagenome | 146 | Y |
F081191 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0190273_10000010109 | F016854 | GAG | MAAPNTKSIPKPGEVWLSCPPYLMMARIVEIDAAAEPPVVSYELHDEDGSLLQAVEHATLDQGWWRTFQRLEPRFG |
Ga0190273_10000010112 | F081191 | GAG | MTQRRQKLPQPEEVVAAIVELADDGFCRRAELVQRFPRLGERDLRRALRRAVGLGLVIERRGPDGAFHVAVSSEGWNLLRNG |
Ga0190273_10000010183 | F049823 | AGGA | VPSQPVQGSYEVARGVVPREKIDDVLRLLHLDLLQRGAAPEELSEWLWGAHWFPHLRQREEVLALAESLPEEWRSGQICEPQILLQFPHVGLEPEIVFHLDQEPAWAGERPYLRIVGVPLSSWRGNNGGLLVQTAEGPAPVEADPGDAIMMTPDLPHSGGVNHTGSLRYGVYFRWLAER |
Ga0190273_1000001082 | F031439 | AGG | MYFIPIVLFILLGLIAVAWTPIFALIIFAIGFALFLGYVAMKPRADEKLAPPEQPGRQPQHENETPTGIWGERRPS |
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