Scaffold Ga0193557_10102621

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193557_10102621

Scaffold Ga0193557_10102621

Overview

Basic Information
Taxon OID	3300019013 Open in IMG/M
Scaffold ID	Ga0193557_10102621 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003089
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1031
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Gulf of Mexico: TARA_142
Coordinates	Lat. (^o)	25.5593	Long. (^o)	-88.4126	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061409	Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193557_101026211	F061409	N/A	MALTIFLFMHLWSIVLGVIENPLDQFCDDSVQEVWQEVAVEDWYWGDDYNEKVAQGDDVNPAGFKSYTLAEFNEPPVCMSVPDSGDKKVEILIETTVEDAHICIHDASDIGFANNDVGNVDTCGMGLLYACFTAAEAEDDDSNVEDFAFYVYCKESCEASDVGLWIRIRTSNQTWQAGKTGVDDDLEMWCEMEKGTTLTDSNGTEHNYFSYPEDLVTDNPLVFPYRIVQVESSPLVVSGGKSNSTAIVIGAIFAILFLMVAGLCVAKNHELLPEGCQKFIPCADKPFDEYE

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