NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193535_10045645

Scaffold Ga0193535_10045645


Overview

Basic Information
Taxon OID3300019024 Open in IMG/M
Scaffold IDGa0193535_10045645 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002797 (ERX1789427-ERR1719237)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1331
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean: TARA_152
CoordinatesLat. (o)43.7056Long. (o)-16.8794Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001659Metatranscriptome655Y
F079564Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0193535_100456452F079564N/AMRADYYSSGEYYLVKSGPVNIQARYLPTKFTHGLAVTKMVAIGGPVLKGNKLIIGPLAATWNGAPIIGSLGATFSQPGLLTVNYDTSGDLIDTTGGVDASKKKIVHVKINDGYS
Ga0193535_100456453F001659N/AMGTPEGLAIQVNRWTASPGNEYVNWKISMHSRPGQDGHCGNFNQNSADDDRLAVRQRVGTQGVPLGADFLFDQKTPVTVANRPDVNNCPPATMTAAKADCAAKYGSVKMSCLTDYCFAGKDVALAH
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