Scaffold Ga0192869_10104881

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0192869_10104881

Scaffold Ga0192869_10104881

Overview

Basic Information
Taxon OID	3300019032 Open in IMG/M
Scaffold ID	Ga0192869_10104881 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000805 (ERX1782188-ERR1712216)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1099
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Atlantic Ocean: TARA_066
Coordinates	Lat. (^o)	-34.9449	Long. (^o)	17.9189	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080023	Metagenome / Metatranscriptome	115	Y
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192869_101048811	F080023	AGGAG	MTKIFTIQIAPVRAPYMREKKRVENTVCKKYVRGKVVYHEFRWNNPKAGRNVMYFDTPDTEAERQPYAEKFAQRVQRAFDKAVTRFHTHYKGLRLEDEIVRVYAPYPDLAPNATITVYSQRIHEYRAHKAFLRDIVSKMNNQYSGLMSLLQRGQWDLSKDSLYLLNKYMFDLQSMCRPDHHVVEFKGKNNP
Ga0192869_101048812	F082546	AGGAGG	MKIESKAILRRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSATTIKLASTK

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