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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019040 Open in IMG/M |
| Scaffold ID | Ga0192857_10068956 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000963 (ERX1782167-ERR1712154) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 899 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Indian Ocean: TARA_065 | |||||||
| Coordinates | Lat. (o) | -35.1728 | Long. (o) | 26.2868 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002829 | Metagenome / Metatranscriptome | 527 | Y |
| F013304 | Metagenome / Metatranscriptome | 272 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0192857_100689561 | F013304 | N/A | EKVDIIKKAITDEVDLLPQGDEVPKDAKDFKDELKRIDDYVTDLQKRTMKTCEQFSEDVKYWAEYKTGIREFRPWLESSEEKAKGGLSKPSTLDEANAMFANVNSFDQNCLKHLKILESAETASLKMTTHKEADDEVKELKERYSKESCF |
| Ga0192857_100689562 | F002829 | AGAAGG | LVKEWKLLDNTVNELNSWVAKDRGAETEQNFSLEKMESTLGELKNIFKEKERLVENL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |