Scaffold Ga0193556_10135687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193556_10135687

Scaffold Ga0193556_10135687

Overview

Basic Information
Taxon OID	3300019041 Open in IMG/M
Scaffold ID	Ga0193556_10135687 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003007
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	768
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	North Pacific Ocean: TARA_138
Coordinates	Lat. (^o)	6.3306	Long. (^o)	-102.9531	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054880	Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193556_101356871	F054880	N/A	TMNQPDVYRKLLINLEPCKGIVYLFVRKTRQCYPNPYSCITDLGTDIERRTKPCDWTHFMSETDRSRDGTPTFFEVPLSSTKYYISVYATENSAYTLTVLADIGAFPRPGNNGKIHARQLRELQVQMSWDPATFVPTGISDVKQYWVYSSMLLDNDDRSNMAVFMRPDKIMNTVCGLINNTDREYIQVPAEACVNGVCNATIDGVITDKRYVFNVVVESHRGYRMAYAGLIMRTDWEVIRQAASDKTLKVIGAVS

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