NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188838_110552

Scaffold Ga0188838_110552


Overview

Basic Information
Taxon OID3300019081 Open in IMG/M
Scaffold IDGa0188838_110552 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS676_3p0_dT
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)614
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)62.09708Long. (o)18.5427Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050859Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0188838_1105521F050859N/AMSLEGTEEFVAGLLYGMIQKDDLPQIQNCLTNAESLEVEITNAVSDISKGDFQDVLKAVQEIGQIIKELPTDLDECKDIQDDITKVEAWAAVFANPVKLAETLTKNLLANWKKVSADVNTVESDWNAAKYYEAGEDVADMLILSVGPISESQNEKEQIDWALLQDHLTANLFLF
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