Basic Information | |
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Taxon OID | 3300019082 Open in IMG/M |
Scaffold ID | Ga0187852_1195808 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 836 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003764 | Metagenome | 469 | Y |
F038518 | Metagenome | 165 | N |
F075559 | Metagenome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0187852_11958081 | F038518 | N/A | AAMRFGMLDPCEEPVYRFGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGSAIQ |
Ga0187852_11958082 | F003764 | GAG | MQIQDDSPYLLDENPAALLAGAEIEAANLSRCLKIVRLWSQSSALPQSRHDEMVEEEQRLANLYAAILFEIGSAFGPRAADELKVRIEAACILDEWECPPAEQGLLFPIPNDPATAASPATPRK |
Ga0187852_11958083 | F075559 | GAG | METIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWLTIALSNDGARAYRLCPLRVFNG |
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