NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188830_1006371

Scaffold Ga0188830_1006371


Overview

Basic Information
Taxon OID3300019085 Open in IMG/M
Scaffold IDGa0188830_1006371 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS670_3p0_dT
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)887
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)65.73045Long. (o)22.445047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066385Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0188830_10063711F066385N/AVVIMATTAIRELQMAALPAAVGTVAILYSNVANMFAMGKFRYANKGVEVHPYKPWSDTTPNAEEHFRAYKAFENGMEWTVIAVPALWLYVLYTPAVPHVGKFLPWTGALLAAAFAYYNTKYLEGYAQSVEARLPPFKARTNALMVLFTGALASMAASFLTTIGIVKMITPKVCERM
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