NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188871_1000063

Scaffold Ga0188871_1000063


Overview

Basic Information
Taxon OID3300019113 Open in IMG/M
Scaffold IDGa0188871_1000063 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS845_ls3
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4343
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014929Metagenome / Metatranscriptome259Y
F039005Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0188871_10000633F039005N/AMLQKQKQTLGGSIYSGLQKGLHIGQKALEYGALAKGIYETGAQLYTIGRTVAPVVAALL
Ga0188871_10000637F014929AGGMPKKLGVDHRYTEKLAKIRKNNVERHAGYENTLALRRNIVRAQRNATYDMELQRLRGATVQGHLAPHAHKRIADLKNMLGK

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