NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193604_1003370

Scaffold Ga0193604_1003370


Overview

Basic Information
Taxon OID3300019132 Open in IMG/M
Scaffold IDGa0193604_1003370 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 49.5 hrs after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3689
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018165Metagenome / Metatranscriptome236Y
F019791Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0193604_10033705F019791AGGAGGMYWYNPTTHASERVAAPANDEEAVSMLAGHPDSARFVSGYAELRRAGSPIERALVLVGHEERLREHEHAPARLAWRERPRRTRPSAVGYELLVAQRLEEEGKDLRKGRRSRARA
Ga0193604_10033706F018165GGAVRDDQTVAEMANEVLMRQAKARADRSGEPIEEAMEAVVNTEAGRQLRELRDGPHGDEGVEEWQVGIARERAWQRVEQLGKHLEEPPEHPTHG

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