NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188881_10001639

Scaffold Ga0188881_10001639


Overview

Basic Information
Taxon OID3300019146 Open in IMG/M
Scaffold IDGa0188881_10001639 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS860_ls5
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2460
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066802Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0188881_100016394F066802N/ATAVYNDFAYDKFNPDIPAPVYSDNGSQNSVRTYTASFFNYDGTHVFPVFNPTMQGLKYKGSVNTYADLSSVTGQKPNWAYIVATDYATNFYSGDIYYWNGSAWTLEGANNTDLLDAFTGAWDRMKTYITTNVSPDAEHTAMINGLFDDCLKDNVLRPETLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGAAISAIASVLNENGGRIRWSGADELNNQYFARGLRINGRTGRIEGRPFTSSVRKLARRASNSRAVV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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