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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019183 Open in IMG/M |
| Scaffold ID | Ga0184601_119962 Open in IMG/M |
| Source Dataset Name | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA1 metaT (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2188 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030619 | Metagenome / Metatranscriptome | 184 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0184601_1199621 | F030619 | GGAGG | MSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWACRSAPRGVAYQVDCVKKLCHNIRGASLHSKRWKVQPCGIRKDVVDCLCRLAVRSPENGFAFTRLSRSLPEPPAREAVRHLQSAAVMASTPFPASAAALVSLRSFVSLSGRARRNLRGPRRLPSSNSSCLEWPATRGGIDGYLEHLGHGLEERGATQAEFSQFAGDSLGAFCLSRARVVLRPCSGVSEDMRESYRCAGLLALRAERKPFAMKATALRAPGYKVRVVGVPDARTFVEGSWIRESSRLLPPGHWTIGSEPREIPNGLHYRRGHTFRSLDLSKATDGLSHAAVEVVIEALVRRGAIRPADHLMARRSLGLVGNTTWSFPDPVGEVVFSRGSPMGTPLSFVVLSWVSAWAVGKFSRSLTHGDDAVGRHRIGSDALDIYASRVASVGAQLNKGKTFRADHSWTACEILALPRENCEDRMTLFVPPSIPPPGLRAPVEADPRLENLWLRRMERVIKSRFPWIKCDPRLHLPVEVGGLGYTGRGLAVGRGLRSRLGALVSRGPSAEIGAALIGKKPFREVGLYPHPLVRVPKPKAYWKAVKAVNQELAPSGADLVPVPLESFESFKCQLVESELRLVEGDRFRRKRVAGRPDRNKRSAVFRRLSVKPAKPLSRFGGLASLKRWALTCKNVRVTVDQDIASEIRERIPDPPQPTQGGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |