NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184590_100604

Scaffold Ga0184590_100604


Overview

Basic Information
Taxon OID3300019184 Open in IMG/M
Scaffold IDGa0184590_100604 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSA2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)892
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024050Metagenome / Metatranscriptome207Y
F069734Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0184590_1006041F024050GGCGGMAVRVTPNVACLWRCLNQQGSELPRWLTSSCHACDEGLELPLIPHLRLYRRWITESPRCSHHSAVPTYRSLSFPKSRPFGIADDSLSELPRTLNPPAPIDGYPSYLGSRTIRFTLVESPGCPRHSPSATAIDQFPGCPKSWVSHRSPIPRASSCPESWFLG
Ga0184590_1006042F069734GAGMSPWLNRTLHLRLAPQMNLRVHSGHGKLGMASGAFTVPIRRFTIGKPTMNS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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