NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180035_1071696

Scaffold Ga0180035_1071696


Overview

Basic Information
Taxon OID3300019191 Open in IMG/M
Scaffold IDGa0180035_1071696 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - R.880 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.217Long. (o)-123.78Alt. (m)Depth (m)11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080070Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0180035_10716961F080070N/ADQVWSTITSLGSAVYLQFINIGTQLLFAGSQIWAQVTPVLNQLKDDLINHTGDAVTIVAQTIASLNQIIGGSGKRDLVSTIVSSLGLDQVWATITSLGSSVYLQFVQIGTQLLFAGQQVWAQAQVVLNQLKNDLLNHTGDAVTIVAQSIASLNQILG
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