Scaffold Ga0180032_1025543

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180032_1025543

Scaffold Ga0180032_1025543

Overview

Basic Information
Taxon OID	3300019201 Open in IMG/M
Scaffold ID	Ga0180032_1025543 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - R6.10AS metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	749
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.183	Long. (^o)	-123.19	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010163	Metagenome / Metatranscriptome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180032_10255431	F010163	N/A	NKSLFSPNLITQNYIQCLFHKIQILKFIKKETFSFYLGWLLVFLFTKFQTIKAKTNYFISYIYFSFINRQKLISYVININLSPTNTFINVNNIKGNPKLFYSAGMFNLQKKQKIKQPKAIITILRALLIKSKIFKTKPVALHFNNLFFNHQSYIFKRLKQKTFIKLMTSYNYQPHNGCRLKKKKRIKIRTRTKKL

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