NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187799_1205135

Scaffold Ga0187799_1205135


Overview

Basic Information
Taxon OID3300019211 Open in IMG/M
Scaffold IDGa0187799_1205135 Open in IMG/M
Source Dataset NameMetatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018334Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0187799_12051351F018334GGAGVTLQDPALRVHEVALNVPVEFEANVTVPVGVTAPVPEASETVAVHVVATPVLTLAGLHETLVLLDLIVEASVNVP
Ga0187799_12051353F018334GAGGVHVVALKVPVLLEVNVTVPVGVTAPVPDASVTDTVHVEATLSRTLAGLHDTAVADERMVDASVNVPLLTR
Ga0187799_12051354F018334GGAVQLVALNVPVELLVKVTVPVGVTAPVPEASATVAVQVDATLSRTLAGEHETVVVDVRLVDASVNVPLLPVCTLSPP
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