NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179946_1261126

Scaffold Ga0179946_1261126


Overview

Basic Information
Taxon OID3300019217 Open in IMG/M
Scaffold IDGa0179946_1261126 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNNA4_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan: Niigata Prefecture
CoordinatesLat. (o)37.43Long. (o)138.83Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060932Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0179946_12611261F060932N/AVEKSGIGGFTPTQFVLTRLRDGFMLPVVRAWGFLPWLSCQEFRTERKKMKTKYWVILTASLVLLAGGAFVLTRSQDVAAQSPTPESYPATVTVQNFTPAGEKIQLGISSAQASQDTLTLTLTMSGVDYEEKVSNYRVTGFEKLVCNPYIVAKEPVSVMFQSVEVKPGDPTQVVYTYSLKGNTYTELNLTMDWTIGPCAPAFDESNVKAPRNPLLTNYRFEFVVPVK
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