Scaffold Ga0179954_1230453

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0179954_1230453

Scaffold Ga0179954_1230453

Overview

Basic Information
Taxon OID	3300019218 Open in IMG/M
Scaffold ID	Ga0179954_1230453 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNMR3_MetaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1230
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan: Gunma Prefecture
Coordinates	Lat. (^o)	36.29	Long. (^o)	139.38	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179954_12304533	F014003	AGGAGG	MQTVFNKAKVKSWIKKAHKHHLFGYGHGHITDGYAILVDEPHMHPTILEIFGTLTPECRYSAERFQKLLDLPDERIEVIDSQLEYVPDPKSRLRIYYDPRTGQELTINGKYFDLLSNPEAHRFFTNDEITRLWIMYDEAVVGVIAPYRLEDQLSHVKFKAEEEREQV

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