NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179941_1093293

Scaffold Ga0179941_1093293


Overview

Basic Information
Taxon OID3300019221 Open in IMG/M
Scaffold IDGa0179941_1093293 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC048_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)771
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)41.12Long. (o)-87.64Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033437Metagenome / Metatranscriptome177Y
F059886Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0179941_10932931F033437N/AALAFAGGVLPDATLRGMRMSRSHGGTVLTVAGRDLSSEASAPGSDAPCREHRAGRGADTPATNISRVGTLTTGTAPACDRPLAPRYGSDLLPLRLHFAFAAG
Ga0179941_10932932F059886GAGGVIYASRAAFAVLRGGRHQLSPTIPRSPGIIPAVLSVAPFRPLRFDC

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