NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179935_1272989

Scaffold Ga0179935_1272989


Overview

Basic Information
Taxon OID3300019231 Open in IMG/M
Scaffold IDGa0179935_1272989 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC057_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045729Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0179935_12729892F045729N/AMQVITNRELNSSLLEFLRGLDYYYPATKTIFQLLYDKGFRSIEVNDLQRFTIVNETQIRFKPAKNNHYRTFLISDFPADFIAAIRNKSPKYISISCNTMRYTFNNLYKYRKVFSGDKAISLHLFRYNFCRKLLDSGETNEQIAEKLGEIDLSNLDSYLHADIYRY
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