Scaffold Ga0179935_1326649

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0179935_1326649

Scaffold Ga0179935_1326649

Overview

Basic Information
Taxon OID	3300019231 Open in IMG/M
Scaffold ID	Ga0179935_1326649 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC057_MetaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	832
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium 34_109	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA: Illinois
Coordinates	Lat. (^o)	41.53	Long. (^o)	-90.43	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021489	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0179935_13266491	F021489	AGGAG	MSTIEKKIESVQEYNLLKLLQSNTNQTRLGMGWIQLNHELCRAFATNGYAMVIADLEPNWWDDIFDGLPELVLITKLNRNEAHYFDGKELDKIKYRSIFEAIGKEPEYEPVMHLDLKLLRNLTDKFDDVYFVKQSGLALFMKLEGDKYPAGSYYGALMPKSITQEETAKIIEALRSLATDGEIRRQRVADLREFAQE

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