NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180112_1219302

Scaffold Ga0180112_1219302


Overview

Basic Information
Taxon OID3300019238 Open in IMG/M
Scaffold IDGa0180112_1219302 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)595
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.923Long. (o)-106.9516Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004065Metagenome / Metatranscriptome455Y
F008460Metagenome / Metatranscriptome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0180112_12193021F008460AGGAGMDVNDADDLVAFQDVRVIRATAPALLCRVGGRSVWLPRAHISGNLWCAGDRGKLFIRRWVARDRHLIDLHGVAIVSPVRSILRALAPASLDQVRRDRESRLGY
Ga0180112_12193022F004065GAGLATKGSAYRAEGNPTLRTICAHCGKSIPTEVGHPRPLDEGLRQETWGLVGYHHERKTVFPTCATCHDAGWR

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