NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181510_1340021

Scaffold Ga0181510_1340021


Overview

Basic Information
Taxon OID3300019240 Open in IMG/M
Scaffold IDGa0181510_1340021 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016105Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0181510_13400211F016105GGAMNIFNWRPKTITLDAQKPVLMGRRNPVTGQSVLMTETDAESHRKFIAEFVASLKPDGMLEIQLAQRLAQDTWRINRIQAVEENIFALGHSEPYANIKSAHPEIHAAMVQALTFRNDPKLLSHLALYEQRLTKNFHLNLNQLLKLQSLRQPVLAKEKVMTAAAA
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