NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180117_1232039

Scaffold Ga0180117_1232039


Overview

Basic Information
Taxon OID3300019248 Open in IMG/M
Scaffold IDGa0180117_1232039 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9228Long. (o)-106.9513Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010988Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0180117_12320391F010988N/AKESTMNRREFITVLGGASALSVINVNPSFAATGTTSLYVKGLVMVDFGNPEFVRLGLPKAPGHKATLGIVPQSGARMTLSIKGSGKIDPIGLVASTNPRIVVPELIRMKELYGNTIKSHVDQCPSVISIPSAAIRSVTTTEVSPVRYTFVRADNGQEVTSFRPRQIAETIKIDLSSAGTLKLDSGKVSIPLETARELRLEYAPDRNDSLDPFADHFNHYFDYIERPAAMDFNVVPKKLSGNSGPVPKIANRFMMDYLAWCYLVALP
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