NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187800_1467832

Scaffold Ga0187800_1467832


Overview

Basic Information
Taxon OID3300019278 Open in IMG/M
Scaffold IDGa0187800_1467832 Open in IMG/M
Source Dataset NameMetatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1692
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008511Metagenome / Metatranscriptome332Y
F073232Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0187800_14678321F008511AGGAVRLADASDAAATVSVMFGVLLVLFPVAFPRLIVNSWEQGRLMPIMMGFTFVLDTFLYLRVAYMQSAKPGLVAAACLGSLPLLVVGGLSLLLQGAVRQTMAMDLPHLEARVGEEVLAHTYLGLVAGVFLPFLVVRLLRQFKATNS
Ga0187800_14678322F073232GGAMRDWTSLKWLFWLGLYVVPVIILPWAISRTWVHQHGRELQITPQQFFKRGELGLPSLVLAVSVIWNLLQSPFRLNTVALGSVILGLSGIMAVAVWVETYCRQTTGTDWHPERGWRDSKSLALLVFSTAAVMQILLDRVAKVVAQ
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