Scaffold Ga0182075_1352420

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182075_1352420

Scaffold Ga0182075_1352420

Overview

Basic Information
Taxon OID	3300019282 Open in IMG/M
Scaffold ID	Ga0182075_1352420 Open in IMG/M
Source Dataset Name	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071407BT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	732
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063590	Metagenome / Metatranscriptome	129	Y
F070146	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182075_13524201	F063590	N/A	MIEILQETTDWGKYPVKNGIYHVNSAGQLVQHNDTVFKNPIKLFNKAHRKFTKIGERPEEFSKDVIVVQG
Ga0182075_13524202	F070146	N/A	VFMLNIRILGMQKEPTGLQKGHEIHDFQYRTRDAEAFEKGKKLVEEFVSKLDFVPADDEFYIIDDPMQITLGEYEDTGKFPGMNTLVFQLEKLGFFAKSVNYRTAEYRPEFARAFNNAVSSPENINEDGSINWNFVDADLYATEHRPNSDAEYYRLYDSIAIQYDLANGIIQ

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