Scaffold Ga0187840_10009772

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187840_10009772

Scaffold Ga0187840_10009772

Overview

Basic Information
Taxon OID	3300019289 Open in IMG/M
Scaffold ID	Ga0187840_10009772 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_HostDNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1301
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.534	Long. (^o)	-110.7978	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100050	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187840_100097723	F100050	GGTGG	MGDVVFHMDVVVRYVVATLLAVVGGWVGYSFVPSAPFGVVGNAMFVGALFGLFAGLFGFTGFFGNVVNVFLLAFPLWHVLPGEWFVVWVGGNAGYAVGNTFGQLARLSAVNKIGVKAL

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