NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0173481_10027704

Scaffold Ga0173481_10027704


Overview

Basic Information
Taxon OID3300019356 Open in IMG/M
Scaffold IDGa0173481_10027704 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1787
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027257Metagenome / Metatranscriptome195Y
F037793Metagenome167Y
F049133Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0173481_100277042F037793GGAGMGKFDKQLAHWREQYRVAVEDLQDLDSGKKKMAEDTGQGWVDTTDRWRDRTRTEVVLFAQLVEVYEKLDARNVSSWFTDVGRSPPPTSTS
Ga0173481_100277043F027257AGGAGGMAIKALKRWSTDELERAIHSDTLNKVEKYEAERILRERERAPDRRLTRMSYNAAAWAEAYSMGTFIVALIIFWLLATGKSLP
Ga0173481_100277044F049133GGAGMARPLKLQIVERARTLIADESRWCRCELARDANGVGVCPMSDSAVKRCGLGALIAAAYETTGDHLAAHDLAIRAMQPLYGTATLVNVNDVRGHAAVLAMFDEVIAAG
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