NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0173481_10035354

Scaffold Ga0173481_10035354


Overview

Basic Information
Taxon OID3300019356 Open in IMG/M
Scaffold IDGa0173481_10035354 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1633
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065886Metagenome / Metatranscriptome127N
F078318Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0173481_100353543F065886GGAGMVKRRVERRSWTRIKPTVAGWYWYRGAYDVNPAGIQKEPVVVFVETARNGHKKTLAGWQPFLNVHVPLTEFTGEWCGPIPEPGD
Ga0173481_100353544F078318GGAMWRKILQFFDRVIVKFFDRVIVKFYNRVIVKFYDRLIVRFFNRLVPYDPEAKVAKAIALLKSKNVAENINTLLNRYFANAGGIDIKRDAACSVELITALGAKEIAESITYTFNQKTIQFLVADMRGSYTPDDSTNYGNLFVLFNGECVLHNDLMFHDKGYKHYGVNFSTSSLKSLKVSIWIDDLRYLVKALTDLEMRARDKQRAESISRTASNIDFGKQRHG
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