NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187894_10001996

Scaffold Ga0187894_10001996


Overview

Basic Information
Taxon OID3300019360 Open in IMG/M
Scaffold IDGa0187894_10001996 Open in IMG/M
Source Dataset NameWhite microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25119
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameUSA: Hawaii
CoordinatesLat. (o)19.2894Long. (o)-155.8119Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096991Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0187894_1000199616F096991AGGLFFMKNILDRRGFLFVSLYPFASMVIPSDSQAQNSQQTVSAKSQDYKDNAVKNRTCWLDVCAPFIVEDNQIGLHSEIVLTSDTFIGTKGYKESKDATEYEIYLYDSEGNAFGSDGVAKRLIVPAMQTTVLSLRDILEENKNFFGGMKIRLRPKGRGEMHASDLFSSAFVRWKTKDSFDNVHANPDPLQWQIKDSFFYSMPFPPLKKYECVFSLFNPYSEPSKGLITLYDQLGQKLKEVLYDLKPYSSLLFDLRSGNFVKDVKSAFGSEDTKNRIDKTTKMLTTEGGTIAITNQQESVKNFGYLLIKRGGGNSRFSIEHPIHQSLFKPVSAKIPFDAEGRFQAKNILYTPLLFRSKKIGGVKLESRFHFSSGAPVEEFLWLRPFITDAEGNVSWQVTDKIALPESIPTKQIEHGTIKLGYGQNCIFDCSLTNLPNNFSGGLSLATAPFVNHTLMKVEILVTEWGAHAFTHFRPGLRAARAYQKPHQRGKLATDYITSGARLERSGNKILRDEIICVINIDDRLIMGNPVLEIFSSSGLLRQIKLGEVPEVSCRHYLLSELLSEKIEAKDLSLRLVDEETTLLMSVLHLDYVRRDIALDHGSDRFSTFQDFNCDVKT
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