 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019360 Open in IMG/M |
| Scaffold ID | Ga0187894_10019678 Open in IMG/M |
| Source Dataset Name | White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4839 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Hawaii | |||||||
| Coordinates | Lat. (o) | 19.2894 | Long. (o) | -155.8119 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000289 | Metagenome / Metatranscriptome | 1365 | Y |
| F000573 | Metagenome / Metatranscriptome | 1016 | Y |
| F000660 | Metagenome / Metatranscriptome | 952 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187894_100196784 | F000660 | AGGA | MAQTIRTFALASVVPFVCACAAVEAAEREQVRAVINLISAVKMPYPEGLRSNVSRTERVVLDTNGSTIACMRIDDKQRWCYEHIAAVGARAEMLRIRSEPAVGITMGQVYHYVVDYDLDGTTDVGSSTKIEGQPHAPVGAVAQFFHRGTNRGDQFRAEYQKLFDDGIQVALKHLGE |
| Ga0187894_100196785 | F000289 | AGG | MLQTTKSCSLVVLLLGLAIAPLHAAEREDVRKVINLVTSVKMPFPENLTRNRAKTERVWLERAGMTAGCIRLEDRRWCYEFIAPEGNRAEMLRIRNEPSRGVFIGALYHYTVDFDLDGLIDVGSTTRIEALDQRRPATPIANVIQFFHRSTKRGESFASEYQKMYDEGIQIALRYFGE |
| Ga0187894_100196786 | F000573 | GGAG | MGLGAWFRRIVVSLGIGGTSYLIMIGIMVLSVVYDRELEPAVTLAFDTGRGIVGALDKLVSGSHWGQVAVNHLRERVNMTHVVLSIPAIVIAAIIVGMPLNKLLGGTRSAVQRIAIALVSIPSTVMLAVVLFSFNALWPDAYAALLRFADWVWQVSLNALSASGDTIPGARKLTNAARQGFSGHHYVIMALCSMVASFVVNALFALAMRSSEIPSPRPA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |