NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187892_10001474

Scaffold Ga0187892_10001474


Overview

Basic Information
Taxon OID3300019458 Open in IMG/M
Scaffold IDGa0187892_10001474 Open in IMG/M
Source Dataset NameBio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53556
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (86.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameUSA: the Island of Hawaii
CoordinatesLat. (o)19.0643Long. (o)-155.8008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002839Metagenome / Metatranscriptome527Y
F007547Metagenome / Metatranscriptome349Y
F045614Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0187892_1000147419F045614N/AMRKHTVKLHGRHCQIRVHREGKHVWFAVGDYLGKEIRAQAESEGAAVKRWRETASTMGAIERAGRE
Ga0187892_1000147424F002839N/AMEQRRFFEVKGEESGEWLVVDAKRHPPRVICRCLGWNAPKNAALIVAALEAHNSELYSKFPLDGSVRLNEQSAVKPSGEVEAATMPKPARKVRARHRG
Ga0187892_1000147449F007547GGAGGMQPIPPQLELPEGDRLTLPTISKVRELVPPGGKLPAHMVLMMICGKELWVPLDKEIARQMANILAPFRA
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