NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187893_10041296

Scaffold Ga0187893_10041296


Overview

Basic Information
Taxon OID3300019487 Open in IMG/M
Scaffold IDGa0187893_10041296 Open in IMG/M
Source Dataset NameWhite microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4915
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameUSA: the Island of Hawaii
CoordinatesLat. (o)19.0643Long. (o)-155.8008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068537Metagenome / Metatranscriptome124Y
F085292Metagenome / Metatranscriptome111Y
F086346Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0187893_100412965F068537AGGAGMKSNYPTLAVLSVLVLFAGLILVQPALAQGQEKAQIVEGELAKVDAAAKTLSVKTAKGEMEFRYNEQTQISGAEGGVEGLATQSGAPVKVHFDASKTATRIEVGKRKQ
Ga0187893_100412966F085292AGGAGGMRIHKQVSILGVVTLFILVMAGCSETQKQTSAEKQPDQAEKPAPMAQAQESPQIFEGELMKVDATSKTLSVKNSEGQEIEFRYNDQTLISGADGGVEGLATKSGTPVSVHFDTATRTTAKIEVRPRQ
Ga0187893_100412968F086346AGGAGGMTVLRQTGMFVLLMLALFSVGTGAQEAGAAQQSAPTPVASTSGGLDGVKTIYVIPMKDRLEHFLTNELVKWGHFEVTINPRQADALLSDTTEVDIKQLMTPDIKIRKTTARTRGTAFLIDLKTERVLWSVAKKPSESFLLG
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