NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194021_1008896

Scaffold Ga0194021_1008896


Overview

Basic Information
Taxon OID3300019703 Open in IMG/M
Scaffold IDGa0194021_1008896 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)854
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012970Metagenome275N

Sequences

Protein IDFamilyRBSSequence
Ga0194021_10088961F012970N/ANQQAAERVADRIPDGFGVDPLTILTLLQTVIPAFLDCLNRNDDTNPDTVFQRVDSLYKKNPERLLRRTARNCRAQARREGTRLSYPQAEDMARAIILEAIGTEPTFGAALAREVEEID
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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