NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193973_1003210

Scaffold Ga0193973_1003210


Overview

Basic Information
Taxon OID3300019737 Open in IMG/M
Scaffold IDGa0193973_1003210 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_9-10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1387
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012114Metagenome283Y
F040582Metagenome161Y
F053980Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0193973_10032101F053980GGAGMNGYQLLAQFEKQIKECFTVPNHWLPLDFQDHRTDCVSLADVERKCDERDRCTMSSFEEESIERAKRVQIYRDQIDKGEKISYLPQ
Ga0193973_10032103F012114AGGAGMTNRDYYNCVFPEKRPRSVWVVYDTQGNKIGEVGAMSETEARQKVAQHVMIPFRLSNIEE
Ga0193973_10032105F040582GGAGMGLIELDFQSIVIGYMVGVALMWSICETFYGENNEKRAETDSKNTRPRYDRRYHMLYGDPPE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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