NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193973_1009204

Scaffold Ga0193973_1009204


Overview

Basic Information
Taxon OID3300019737 Open in IMG/M
Scaffold IDGa0193973_1009204 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_9-10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)978
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002721Metagenome / Metatranscriptome534Y

Sequences

Protein IDFamilyRBSSequence
Ga0193973_10092043F002721AGGAMAKDARLDLGRYIQNPFNRRGQIPKRLDFDDLFRAKPETGDYPWNPSRFNERDLLKRSMTRKVTLNPDLNFVGNSPFFDENEDVQAGYELFEGLGRFNRPSDYDFNEGRARTQQRPQNQPDFNAEWMEAYKISPTLNPGKMAKNPMPRLRNPDPNGYLMAMAERRAENEVEDKPSIAQLLDREGLIKE
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