Scaffold Ga0194000_1007400

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194000_1007400

Scaffold Ga0194000_1007400

Overview

Basic Information
Taxon OID	3300019750 Open in IMG/M
Scaffold ID	Ga0194000_1007400 Open in IMG/M
Source Dataset Name	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1205
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077248	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194000_10074004	F077248	N/A	VRGFADLETPPAFLPVVGNNPDMARSPSQRLQLFEELRDRVESGLLSGAPVVTYTVDGQTISKEPTSVWLAELDSRIADLRRQSSGGLGASRNAV

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