NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194029_1000688

Scaffold Ga0194029_1000688


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1000688 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4202
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F001217Metagenome / Metatranscriptome745Y
F015096Metagenome / Metatranscriptome257Y
F045763Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10006881F015096GAGLYINHKDEDNMNYRTEWQARQKELEDKYVELMLAKYPLLTDVTTDTQRKNGTRMFELNHKKYGPTRFATYKTGMVRKIIRTRFNELSCYQLNPQRKSIRYYAHLSDNSELNIKSYESTQRVGISSGLARLVYLEKYLIKNYNLDSVQDIIEVDGVLYKKI
Ga0194029_100068810F000352N/AMRNIKLTENDCTFVHYVLRMYAQQTPGLDSEDKEEIREVAAKFK
Ga0194029_10006885F001217N/AMSKTKFNGFEKYFIQTALRHAIEEAEKDVLAAEADGKRSIYAPGYFTLVGNEIIDKVNSMTLKKYQD
Ga0194029_10006889F045763N/AMNKIHWSEETINYFKFISSYLTKEQTIQKIELFVEMDCVPQGDESEEDLIQDLTNIIFKD
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