NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194029_1001257

Scaffold Ga0194029_1001257


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1001257 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3206
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010318Metagenome / Metatranscriptome305Y
F032867Metagenome / Metatranscriptome179Y
F054777Metagenome / Metatranscriptome139N
F066266Metagenome / Metatranscriptome127N
F069855Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10012571F069855GAGGMAMKKVLELHPLGGTVVKLKHVDDVEPKKLSKNQRKKLLKGYYSKEKHVAMLTSIMNGKYYNRKANNKKGILPSQMGTIRKSIYKLNPETLAHMIREQEKRIAI
Ga0194029_10012575F054777AGGAGGMTNKINDETLERLYEDVVADDEKGLLEKEIRDMVLRYGLHADDDRDEILQLIAEDEFYKQFT
Ga0194029_10012576F066266AGGAGMSILDEHKLEKKIVYTVKEKIQEALAYRTHDRRTNKSCNQDYRKTIRDAKDFDELKRIMSEFVDDLMHI
Ga0194029_10012577F032867AGGAGMDELEKMIDDLVDNHYRRQHLIGTEADESEYLADISEEDDEDLD
Ga0194029_10012579F010318AGGAGGMNVDSDKPKYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEHEGNQGETDWKWSARESILTEDWSLVEGLN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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