NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194029_1003604

Scaffold Ga0194029_1003604


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1003604 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2042
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020533Metagenome / Metatranscriptome223N
F031662Metagenome / Metatranscriptome182Y
F038411Metagenome / Metatranscriptome166N
F044429Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10036043F038411AGGAGMTQHTEKVEQVRRRNRLDNWRKGIKFSLGETINNGEDVKHTTIYNDDSQTIEYLKSDRKTETIPSPHSEDDLVDLMMRGETATAEAIIRKLAQGEDNE
Ga0194029_10036044F044429AGGAGMSELPPIEDRMPGCEWVLVIKYGDPYTNIPQTTSFGPFPTKEDADSFRAQYYYDQIVIAEIVPLNAVLPDSATELDIDFVPEGKVVDISSKINPNKH
Ga0194029_10036045F031662AGGAGMDFKIEKNVPVRTFNSPFCEALDQLEIGDSIGNLTKKEVYRYRPNFYTPTFRDRKFTFKKETGTMYRIWRVA
Ga0194029_10036047F020533AGGMQDAIMLDQDDLVAEFERKVRDKKIFFEVINPGETESKGVDIEAMLEENNKLKSELRIWKDIVEKSITADARRGFNG

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