Scaffold Ga0194029_1012005

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0194029_1012005

Scaffold Ga0194029_1012005

Overview

Basic Information
Taxon OID	3300019751 Open in IMG/M
Scaffold ID	Ga0194029_1012005 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1254
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028035	Metagenome / Metatranscriptome	193	N
F046634	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10120052	F046634	AGGAG	MTTQPSFVPYTESKSAEDRIAYVKANPHKYMPKAQYDLVKSLHSKIESLDSKMNEILAKK
Ga0194029_10120053	F028035	GAG	MITYEVMQRIEGDTEKHSNYELIQYEFPFPENSVLIERDKEMNRILNKPIIITTSNNNNCQQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.