NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1007330

Scaffold Ga0194023_1007330


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1007330 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2212
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030742Metagenome / Metatranscriptome184N
F043434Metagenome / Metatranscriptome156N
F064618Metagenome128N
F072290Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10073302F064618GGAGMITTRILAALFVVLFTLTACTGLGLATKGATLIADATGNAQIEQATEILTEVAGDAVPLAGIINITNTNWIMLGLLILGWILPSPGEILRTIFNPIGWLIKTLLTRR
Ga0194023_10073303F030742GAGGMKNFLIAVSVMVASVATAQEAPSVGNTYVELGTTFENETTLAIGTGVGSGALAAFGELSGSTDGNFQARVYTNSEFGKFVFTPGLNYGWGADGGDLVGFGENNEWGNVTGDLEVSVNPGIVGGEYAFVNTGVGIDGWSLQWDGGEVGAGYKLDLADNVYLDGRVSWGYDDQFEGTDRSITAGFGLKF
Ga0194023_10073304F043434GAGGMTWDWHWIGSFKGTPFIWGDFRYNSGDPYKSYRFGPLLIRVFTTGVN
Ga0194023_10073306F072290GAGMKAYSIKKFKKLLADCDMVYGTVSLNAAVRVPVRIRKKTLLQHLEDITPGTWADQLMIFAEIQTSPKGNKVLKLV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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