NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1000301

Scaffold Ga0194024_1000301


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1000301 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9624
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (18.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F017473Metagenome240Y
F018534Metagenome / Metatranscriptome234Y
F025731Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0194024_100030110F018534N/AMALPTLTDFLNSWDKLIVTGVTPERNNSVMTTTTSNIPVAIEYRHQINSSTGECSTIAFLVAYDENGNRVSLRNQTYGCFGDEEKQFHQWFAKKMAEGCGLDVSNRLNVARAVDDALS
Ga0194024_100030118F017473N/AMTPQRKEEHIRNIAFCIQNGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFDAFIEQNPNIND
Ga0194024_100030119F008453N/AMTKYAVYRVFRDWNKKPQVLMDNLSREQAQNIVKNTPYEDESMVVFDKMK
Ga0194024_10003014F025731N/AMSNNTDTQRKKAQMASALFNDVQFLSMDAIRNTAEFDALSCDDQMRLEDLVGSMSNFQNL
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