NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1001590

Scaffold Ga0194024_1001590


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1001590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4670
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003805Metagenome / Metatranscriptome467Y
F006109Metagenome381Y
F047029Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0194024_10015903F003805GGAGMRPIEHSTESCFHKAATDQWLVDRFNAGDYRGLLEAALILNTLHQLEKTKANWAIHEAADNLADRFGLDRDSA
Ga0194024_10015906F006109N/AMTRYVVMAGDRWVTAVYGPGKGIAVTRVKEDASSWPNYERAVVAARAAADCTSSPVAIHSIEEPSY
Ga0194024_10015909F047029GAGMFQRWQKLMSEAVGSTPNNPIKLNQYRVTLYPKHGATETIYMEAPDVYTAQMYTRRVYPDHRILAIKPVIDLVEERVL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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