NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1010828

Scaffold Ga0194024_1010828


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1010828 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1903
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002733Metagenome / Metatranscriptome534Y
F028792Metagenome / Metatranscriptome190N
F029289Metagenome / Metatranscriptome189N
F029934Metagenome187N

Sequences

Protein IDFamilyRBSSequence
Ga0194024_10108281F029289GGAGMSSAITPRYPNAASDPRLTNTADKYFTLRRQIRDKEWNREPVTNAERDKLATLKRALNDDKHYTPNF
Ga0194024_10108283F002733AGGAGMTKTNTIWLELTHNEANALMVMLDSEIENTHEVCGISIRDWETLDLEAYKLLAFHKFKTWYMENCDG
Ga0194024_10108286F029934GGAGMATILRTCLACNGGGIAEYDKPRVDHANGGWIDSTYGKCDVCDGEGDLHVLSEFTSLDILSFLNEAGKILEDADIVDSTLDDIYGHVKDAKDKVREYIKFHGYDGDNR
Ga0194024_10108287F028792GGAMVEMSNRGDYKVRVRMTIEREVIVNADGFDDAEFKAIKEAIALVDGYDAEVLWAVEHGSLSDWEKNDGNDT
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