NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1052345

Scaffold Ga0194024_1052345


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1052345 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)905
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012450Metagenome280N
F022189Metagenome215N

Sequences

Protein IDFamilyRBSSequence
Ga0194024_10523452F012450N/AMKALIDKIPNFDTVIKSNGFAVFVMFAMMAAMAYTLWNQYNNMNQRLTKLEQEVIECYKENMLHNQGIIERNTKVMEEVLNNLNIK
Ga0194024_10523453F022189N/ARLMKREKLARLYAPVNDIIRSMEGYGFFVKTRLKFGDKFEGRWIARINGGDIIWLEVDRFMNVTETTMQGEPIEGGRTGKMLIYTENRFKVQNVFNDVIDFREYWNKELDTPFFVIESNGNKVVMRKID
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